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Scientific project coordinated by the Human Proteome Organization
The Human Proteome Project (HPP) is a collaborative effort coordinated by the Human Proteome Organization. Its stated goal is to experimentally observe
Human_Proteome_Project
World Community Grid volunteer computing project
The Human Proteome Folding Project (HPF) is a collaborative effort between New York University (Bonneau Lab), the Institute for Systems Biology (ISB) and
Human Proteome Folding Project
Human_Proteome_Folding_Project
International consortium
Award in Proteomic Sciences Human Genome Organisation Human Genome Project Proteomics Standards Initiative Human Proteome Project "HUPO - HUPO History". www
Human_Proteome_Organization
Set of proteins that can be expressed by a genome, cell, tissue, or organism
bacteria. Human proteome. Currently, several projects aim to map the human proteome, including the Human Proteome Map Archived 2020-08-06 at the Wayback Machine
Proteome
International scientific research project (1990–2003)
research project Human Connectome Project – Research project Human Epigenome Project Human Microbiome Project – Former research initiative Human proteome project –
Human_Genome_Project
Large-scale study of proteins
Proteomics is the large-scale study of proteins. The proteome is the entire set of proteins produced or modified by an organism or system. Proteomics is
Proteomics
Research project to synthesise the human genome
Nomenclature Committee Human Cytome Project Human Microbiome Project Human Proteome Project Human Protein Atlas Human Variome Project List of biological databases
Genome_Project–Write
Protein–protein interactions in human cells
efforts of many, the human interactome is still very much a work in progress. Protein–protein interaction prediction Human proteome project Cancer systems biology
Human_interactome
Indian scientist
member of the Council of Human Proteome Organization. He is most noted for his contributions in the Human Proteome Project where he served as the Group
R._Sirdeshmukh
Canadian protein biochemist (born 1958)
Eric W. (2016). "Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational
Ronald_Beavis
Central organ of the human nervous system
Sunderland, MA: Sinauer Associates. ISBN 978-0-87893-236-8. "The human proteome in brain – The Human Protein Atlas". www.proteinatlas.org. Archived from the original
Human_brain
South korean biochemist
the director of the Yonsei Proteome Research Center in Seoul, Korea. In 2009, he was chosen President of the Human Proteome Organization (HUPO). Paik grew
Young-Ki_Paik
Evolutionary process
history, humans gradually developed traits such as bipedalism, dexterity, and complex language. Modern humans interbred with archaic humans, indicating
Human_evolution
DNA that does not code for proteins
Omenn GS (2021). "Reflections on the HUPO Human Proteome Project, the Flagship Project of the Human Proteome Organization, at 10 Years". Molecular & Cellular
Non-coding_DNA
American doctor (born 1941)
of the international Human Proteome Organization (HUPO) in 2001, a member of the Council of HUPO's pilot Plasma Proteome Project from 2002 through 2010
Gil_Omenn
large proteomics database generated using GPM; Inclusion in the Human proteome project as a data analysis and information resource; Development of a REST
Gpm_(proteomics)
Topics referred to by the same term
of food Holme Pierrepont National Watersports Centre, in England Human Proteome Project Hydroelectric power plant Hydrometallurgy Pilot Plant, in Egypt
HPP
and with significant efforts by Zhi Sun and Dave Campbell. Human proteome project Human Protein Atlas NeXtProt PeptideAtlas web site (www.peptideatlas
PeptideAtlas
Human chromosome
of human chromosome 19". Nature. 428 (6982): 529–35. Bibcode:2004Natur.428..529G. doi:10.1038/nature02399. PMID 15057824. Human Proteome Project Launch
Chromosome_19
Bioinformatics software researcher
board to the human proteome project and contributed data integration and visualisation within the GTEx consortium, an international project aiming to understand
Kate_R._Rosenbloom
Proteogenomics research scientist
Chromosome-centric Human Proteome Project, and is the group lead of chromosome 4. Chen served as president for the Human Proteome Organization (2021-2022)
Yu-Ju_Chen
gene resides in can give better context for its action. Human proteome project Interactome Proteome anon. "BioPlex". harvard.edu. harvard.edu. Retrieved
BioPlex
Small proteins in human
the Human Proteome". GEN - Genetic Engineering and Biotechnology News. Retrieved 2026-05-08. Smith, Rhianna-lily (2026-05-07). "The Human Proteome Just
Peptidein
Effort to determine the DNA sequence of the chimpanzee genome
ribosomal protein L23a pseudogenes are scattered through the human genome. The chimpanzee proteome is described in the paper by Yufan Wang titled "The Chimpanzee
Chimpanzee_genome_project
Australian scientist
Recently, he has enjoyed collaborating on the Human Proteome Project (published 2020) and the Human RNA Atlas Project (published 2021). Wilkins, Marc R.; Sanchez
Marc_Wilkins_(geneticist)
IBM-sponsored Human Proteome Folding Project ("HPF"), phase 1, was announced on November 16, 2004, and was completed July 3, 2006. The project operated simultaneously
Grid.org
Subfamily of viruses in the family Coronaviridae
LL, et al. (August 2003). "Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage"
Coronavirus
BOINC based volunteer computing project to aid scientific research
of Human Proteome Folding Phase 2 project". World Community Grid. Archived from the original on 2019-02-04. Retrieved 2007-08-04. "Human Proteome Folding
World_Community_Grid
Wholistic physiological dynamics of an organism
normal intact organism and is built upon information and structure (genome, proteome, and morphome). The term comes from "physio-" (nature) and "-ome" (as a
Physiome
Topics referred to by the same term
Hours post fertilization, a metric for developmental biology Human Proteome Folding Project Hyperpalatable food Hibernation Promoting Factor, a hibernation
HPF
Database of human proteins
academia and industry to freely access the data for exploration of the human proteome. In May 2026, version 25.1 was launched where Deep Visual Proteomics
Human_Protein_Atlas
diseases. Human Molecular Genetics 14, R225-R234. [2] doi:10.1093/hmg/ddi330 Evolutionary expansion and anatomical specialization of synapse proteome complexity
Genes_to_Cognition_Project
Biochemist
participated in the Human Proteome Project, the SysteMHC Atlas project, and the Minimum Information Required for a Glycomics Experiment (MIRAGE) project. 2023 Analytical
Catherine_E._Costello
Sub-discipline of biology
biology. Degradomic studies of human tissue have also contributed to the Human Proteome Project (HPP) of the Human Proteome Organization (HUPO). The protease
Degradomics
Organ covering the outside of the human body
1600-0625.2008.00786.x. PMID 19043850. S2CID 31353914. "The human proteome in skin – The Human Protein Atlas". www.proteinatlas.org. Uhlén M, Fagerberg L
Human_skin
Set of all RNA molecules in one cell or a population of cells
Szigyarto, Cristina Al-Khalili (2015-01-23). "Tissue-based map of the human proteome". Science. 347 (6220) 1260419. doi:10.1126/science.1260419. PMID 25613900
Transcriptome
Discipline in genetics
of completion of genome sequencing projects. The first complete genome sequence of a eukaryotic organelle, the human mitochondrion (16,568 bp, about 16
Genomics
Volunteer computing projects are a type of distributed computing where volunteers donate computing time to specific causes. The donated computing power
List of volunteer computing projects
List_of_volunteer_computing_projects
Protein-coding gene in the species Homo sapiens
PMID 15489334. Andersen JS, Lam YW, Leung AK, et al. (2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. Bibcode:2005Natur.433...77A. doi:10
NOLA2
Protein-coding gene in the species Homo sapiens
site 5-like (Homo sapiens) Chromosome-centric Human Proteome Project Chromosome-centric Human Proteome Project, EVI5L (Homo sapiens) Archived 2014-05-12 at
EVI5L
Japanese medical research project
providing metabolome and proteome data from the cohort participants, is opened. As of 2022, jMorp covers metabolome, proteome, transcriptome, methylome
Tohoku Medical Megabank Project
Tohoku_Medical_Megabank_Project
American genetics researcher
transcriptomes, proteomes, and other high-throughput omics datasets. His lab has contributed to understanding the genomes and transcriptomes of yeast and humans. The
Michael_P._Snyder
Human chromosome
encoded in the human chromosome 4. J Proteome Res Pertea M, Salzberg SL (2010). "Between a chicken and a grape: estimating the number of human genes". Genome
Chromosome_4
Protein-coding gene in the species Homo sapiens
through stable isotope labeling by amino acids in cell culture (SILAC)". J. Proteome Res. 5 (1): 64–75. doi:10.1021/pr0502626. PMID 16396496. Gerhard DS, Wagner
MLSTD2
Protein-coding gene in the species Homo sapiens
PMID 17353931. Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8
MED7
Protein-coding gene in the species Homo sapiens
PMID 15489334. Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8
SH3BP1
Creating a computer model of all or part of a brain
and the Blue Brain Project Showcase. In 2013 the Human Brain Project, which has utilized techniques used by the Blue Brain Project and built upon them
Brain_simulation
Collection of techniques used to analyze biological markers in the genome and proteome
collection of techniques used to analyze biological markers in the genome and proteome, and how their cells express their genes as proteins, applying molecular
Molecular_diagnostics
Organ that connects the fetus to the uterine wall
for Women who were enrolled in the Collaborative Project. "The human proteome in placenta - The Human Protein Atlas". www.proteinatlas.org. Archived from
Placenta
Protein-coding gene in the species Homo sapiens
Bösche M, Krause R, et al. (2002). "Functional organization of the yeast proteome by systematic analysis of protein complexes". Nature. 415 (6868): 141–7
TRAPPC4
Swiss bioinformatician (1957–2025)
Prot: Organizing protein knowledge in the context of human proteome projects". Journal of Proteome Research. 12 (1): 293–8. doi:10.1021/pr300830v. PMID 23205526
Amos_Bairoch
Field of biology
large-scale structural and functional relationships of the human genome, transcriptome, proteome and metabolome, with a particular focus on devising new
Medical_biology
ORFeome, which gives rise to the transcriptome, which is translated to the proteome. Other terms are overlapping and refer to the structure and/or function
List of omics topics in biology
List_of_omics_topics_in_biology
Protein-coding gene in the species Homo sapiens
S2CID 21273764. Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8
APPL2
Organ found in humans and other animals
23 August 2018. Retrieved 31 July 2016. "The human proteome in heart". www.proteinatlas.org. The Human Protein Atlas. Archived from the original on 9
Heart
Protein-coding gene in humans
PMID 15489334. Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8
PSG3
Genetic study of ancient Neanderthal DNA
back to 1 million years ago. A 2020 analysis of H. antecessor enamel proteomes suggests that H. antecessor is related but not a direct ancestor. Neanderthals
Neanderthal_genetics
Artificial intelligence program by DeepMind
493–500 (2024) Folding@home IBM Blue Gene Foldit Rosetta@home Human Proteome Folding Project Predicted Aligned Error authors), Kathryn Tunyasuvunakool, Jonas
AlphaFold
Parasitic disease also known as sleeping sickness
R, Kolev NG, Shi H, Ullu E, Walther TC, Tschudi C (October 2017). "The proteome and transcriptome of the infectious metacyclic form of Trypanosoma brucei
African_trypanosomiasis
Protein-coding gene in the species Homo sapiens
PMID 15498874. Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8
BAT5
Primary organ of the respiratory system
April 2017. Archived from the original on 4 April 2017. "The human proteome in lung – The Human Protein Atlas". www.proteinatlas.org. Retrieved 25 September
Lung
Protein-coding gene in the species Homo sapiens
S2CID 7200157. Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8
PHB2
International bioinformatics company
pombe and of pathological fungi WormPD: The proteome of Caenorhabditis elegans HumanPSD: The proteomes of human, mouse and rat [8] GPCR-PD: G-protein coupled
Biobase_(company)
Biological process of getting older
Yaobin; Jiang, Mengmeng; Xiong, Muzhao (22 July 2025). "Comprehensive human proteome profiles across a 50-year lifespan reveal aging trajectories and signatures"
Ageing
Protein-coding gene in the species Homo sapiens
PMID 15746151. Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8
BRINP1
Open source middleware system for volunteer and grid computing
computing projects, and not designed with a high level of security. As a result, some participants in the project attempted to cheat the project to gain
Berkeley Open Infrastructure for Network Computing
Berkeley_Open_Infrastructure_for_Network_Computing
BOINC based volunteer computing project researching protein folding
Rosetta-based applications, like RosettaDock or the Human Proteome Folding Project and the Microbiome Immunity Project, after being sufficiently developed and proven
Rosetta@home
Hypothetical process of digitally emulating a brain
artificial human brain can be built within the next 10 years." In 2013, Markram became the director of the new decade-long Human Brain Project. Less than
Mind_uploading
Protein-coding gene in the species Homo sapiens
Cusick ME, Hill DE, Roth FP, Vidal M (October 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–1178
SH2D4A
Suffix in biology
Institute); for example, the MRC centre carried out the first genome and proteome projects. Many "omes" beyond the original "genome" have become useful and have
Omics
Protozoan species of malaria parasite
are targeted to the apicoplast, while 4.7% of the proteome is targeted to the mitochondria. Humans are the intermediate hosts in which asexual reproduction
Plasmodium_falciparum
Protein-coding gene in the species Homo sapiens
PMID 15489334. Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8
MALL
Enzyme found in humans
PMID 22516080. Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8
Dehydrodolichyl diphosphate synthase
Dehydrodolichyl_diphosphate_synthase
linguistics is different from other common biological -omes such as genome, proteome, and expressome in that it is not biological. However, speechome reflects
Speechome
Branches of science that involve the scientific study of life
main components of the physiological metabolic pathways of cells. The proteome is the entire set of proteins, produced or modified by an organism or system
List_of_life_sciences
State of steady internal conditions maintained by living things
lower concentration Proteostasis – Process of regulating a functional proteome Senescence – Deterioration of function with age Steady state – When concentrations
Homeostasis
Knowledgebase of protein termini
human proteome project: N termini and Nalpha-acetylation status differentiate stable cleaved protein species from degradation remnants in the human erythrocyte
TopFIND
Genus of disease-spreading insects
infecting G. p. gambiensis, during this time the parasite changes the proteome contents of the fly's head. This may be the reason/a reason for the behavioral
Tsetse_fly
Protein-coding gene in the species Homo sapiens
2020-09-10. Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8
Gamma-glutamyl_hydrolase
Computer scientist
Cheng; Guido Novati; Joshua Pan; et al. (19 September 2023). "Accurate proteome-wide missense variant effect prediction with AlphaMissense". Science. 381
Pushmeet_Kohli
Different products from the same gene
not clear to what extent such a process affects the diversity of the human proteome, as the abundance of mRNA transcript isoforms does not necessarily correlate
Isoform
Last part of the digestive system in vertebrates
Mathias; Pontén, Fredrik (2015-01-01). "The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based
Large_intestine
Sub-field of genomics
genomes, transcriptomes and proteomes in model organisms such as mice, identifying potential oncogenes and referring back to human cancer samples to see whether
Oncogenomics
Study of protein networks in biology
Cottingham, Katie (May 2008). "Human Toponome Project | Human Proteinpedia is open for (free) business". Journal of Proteome Research. 7 (5): 1806. doi:10
Toponomics
mostly derived from genome sequencing projects. In contrast, TDP can, in theory, yield comprehensive proteome analyses at the level of proteoforms provided
Top-down_proteomics
Protein-coding gene in the species Homo sapiens
PMID 12477932. Gevaert K, Goethals M, Martens L, et al. (2004). "Exploring proteomes and analyzing protein processing by mass spectrometric identification
EHD1
Organ in the gastrointestinal tract
Livingstone. pp. 295–299. ISBN 978-0-8089-2306-0. "The human proteome in small intestine - The Human Protein Atlas". www.proteinatlas.org. Retrieved 2017-09-26
Small_intestine
Protein-coding gene in the species Homo sapiens
et al. (2006). "Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry". J. Proteome Res. 4 (6):
MINPP1
Swedish cell biologist
(1 December 2010). "Defining the transcriptome and proteome in three functionally different human cell lines". Molecular Systems Biology. 6: 450. doi:10
Emma_Lundberg_(scientist)
Protein-coding gene in the species Homo sapiens
"neXtProt: Organizing Protein Knowledge in the Context of Human Proteome Projects". Journal of Proteome Research. 12 (1): 293–298. doi:10.1021/pr300830v. PMID 23205526
FAM166B
Protein-coding gene in humans
PMID 15557185. Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8
CFHR1
Species of bacteria
proteome of H. pylori has been systematically analyzed, and more than 70% of its proteins have been detected using SILAC. About 50% of the proteome has
Helicobacter_pylori
Mitochondrial protein and coding gene in humans
(2005). "Protein profiling of human pancreatic islets by two-dimensional gel electrophoresis and mass spectrometry". J. Proteome Res. 4 (3): 931–40. doi:10
TUFM
Biomolecule consisting of chains of amino acid residues
Ori A, Szymborska A, et al. (November 2011). "The quantitative proteome of a human cell line". Molecular Systems Biology. 7 549. doi:10.1038/msb.2011
Protein
Mammalian protein found in Homo sapiens
PMID 15632136. Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8
Prolactin-induced_protein
American ophthalmologist
Spectrometry. He also is a member of the Human Proteome Organization, and leads its Human Eye Proteome Project. He has been a featured speaker at national
Richard_David_Semba
Species of Old World monkey
Jacobs, T. M.; Smith, J. M.; Katze, R. D.; Michael, G. (2010). "Macaque proteome response to highly pathogenic avian influenza and 1918 reassortant influenza
Rhesus_macaque
Scientific study of chemical processes involving metabolites
the metabolome and the other cellular ensembles (genome, transcriptome, proteome, and lipidome), which can be used to predict metabolite abundances in biological
Metabolomics
Protein-coding gene in the species Homo sapiens
partners: interaction with translation elongation factor EF1alpha". J. Proteome Res. 6 (4): 1410–1417. doi:10.1021/pr060584p. PMC 4626875. PMID 17373842
TUBA1C
Protein-coding gene in the species Homo sapiens
U, Lalowski M, et al. (2005). "A human protein-protein interaction network: a resource for annotating the proteome". Cell. 122 (6): 957–68. doi:10.1016/j
DLST
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