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Bioinformatics database for E. coli
In bioinformatics, EcoCyc is a biological database for the bacterium Escherichia coli K-12. The EcoCyc project performs literature-based curation of the
EcoCyc
Set of biological pathways
networks are available online: Kyoto Encyclopedia of Genes and Genomes (KEGG), EcoCyc, BioCyc and metaTIGER. Metabolic networks are powerful tools for studying
Metabolic_network
Salt formed from acetic acid and a base
ISSN 1553-7374. PMC 8794153. PMID 35085362. Keseler, Ingrid M.; et al. (2011). "EcoCyc: a comprehensive database of Escherichia coli biology". Nucleic Acids Research
Acetate
American scientist (1926–2013)
and Evolution led by Mitchell Sogin. During this time, she co-founded the EcoCyc database of Escherichia coli metabolism, leading the curation of metabolic
Monica_Riley
well as hyperlinks to other sources of information such as EcoGene and EcoCyc, scientific abstracts, and interactive applets to view structures or chromosomal
CyberCell
Guatemalan scientist and professor
this data available. He has also been involved in the construction of the EcoCyc E. coli database and the completion of the sequenced E. coli genome. He
Julio_Collado-Vides
Biochemical conversion of six-carbon sugars into acids in bacteria
stages. These stages are outlined by the biological database for E. coli, EcoCyc. The first of these two stages is a glycolysis reaction. Under anaerobic
Mixed_acid_fermentation
Form of biological modelling
information can be searched by typing in the enzyme of choice. BioCyc, EcoCyc, and MetaCyc: BioCyc Is a collection of 3,000 pathway/genome databases (as
Metabolic_network_modelling
Series of chemical reactions resulting in a cell response
Human Interactome, OPHID – Online Predicted Human Interaction Database, EcoCyc – Encyclopaedia of E. Coli Genes and Metabolism, MetaCyc – aMetabolic Pathway
Biochemical_cascade
Type of biological database
Santos-Zavaleta A, Gama-Castro S, Bonavides-Martínez C, et al. (January 2013). "EcoCyc: fusing model organism databases with systems biology". Nucleic Acids Research
Model_organism_database
Strain of bacteria
(PDF). IGEM. Retrieved 2024-06-07. "EcoKI restriction-modification system". EcoCyc. Retrieved 2024-06-07. "P0AED9 · DCM_ECOLI". UniProt. Retrieved 2024-06-07
Escherichia_coli_BL21(DE3)
Biological database
pathway knowledge (MINT, HPRD, BIND, DIP, BioGRID, KEGG, Reactome, IntAct, EcoCyc, NCI-Nature Pathway Interaction Database, GO). Links are supplied to the
STRING
Clinical Genome Resource (ClinGen) DNA Data Bank of Japan (DDBJ Center) EcoCyc Ensembl Europe PMC European Nucleotide Archive (ENA) FlyBase GENCODE Gene
Global_Biodata_Coalition
American Computational Biologist
development of the BioCyc database collection (which includes the highly curated EcoCyc and MetaCyc databases). BioCyc databases combine genome, metabolic pathway
Peter_Karp_(scientist)
Project CSHLmpd Database of Genomic Variants DictyBase DroSpeGe Echinobase EcoCyc FlyBase Fungal Comparative Genomics Fungal Telomere Browser Gallus Genome
Generic Model Organism Database
Generic_Model_Organism_Database
Mutant srains of Escherichia coli
been a corner-stone in the development of new bioinformatics tool in the EcoCyc database that allows for a comprehensive catalog of each part of the E.coli
Keio_Collection
metabolic pathways found in humans. The remaining five databases include, EcoCyc (E. coli), AraCyc (Arabidopsis thaliana), YeastCyc (Saccharomyces cerevisiae)
BioCyc_database_collection
A. G.; MacKie, A.; Paulsen, I.; Gunsalus, R. P.; Karp, P. D. (2010). "EcoCyc: A comprehensive database of Escherichia coli biology". Nucleic Acids Research
HisB
Spring Harbor Laboratory) WikiPathways BioCyc Database Collection: includes EcoCyc and MetaCyc BRENDA: the comprehensive enzyme information system, including
List_of_biological_databases
included. RegulonDB was founded in 1998 and also contributes data to the EcoCyc database. In bacteria, such as E. coli, genes, are regulated by sequence
RegulonDB
Database of biological information
mainly those that are often used in research (model organisms). For example, EcoCyc is an E. coli database. Other popular model organism databases include Mouse
Biological_database
Genome manipulation method
César; Fulcher, Carol; Huerta, Araceli M.; Kothari, Anamika (2013-01-01). "EcoCyc: fusing model organism databases with systems biology". Nucleic Acids Research
No-SCAR_genome_editing
Catalytic enzyme
AP009048 GenBank Protein ID 1651571 PDB ID 1YR3, 1YQU ,1YQQ Ecogene ID EG20250 Ecocyc EG20250 ColiBase b2407 Kegg Gene b2407 EchoBASE ID EB4152 CCDB XAPA ECOLI
Xanthosine_phosphorylase
Scientific study
PMC 220237. PMID 7045076. "Escherichia coli K-12 substr. MG1655 citT". ecocyc.org. Retrieved 2016-05-23. Desjardins, Eric (2011-01-01). "Historicity and
E. coli long-term evolution experiment
E._coli_long-term_evolution_experiment
Database of E. coli metabolites
ECMDB data is available through a public web interface and downloads. EcoCyc KEGG Metabolic network Metabolome Metabolomics List of biological databases
E._Coli_Metabolome_Database
1042/bj20031527. PMC 1224009. PMID 14641112. "Fructoselysine kinase P45543". UniProt. Retrieved 17 January 2016. Ecocyc UniProt, also Q6IFZ3 Pubmed v t e
Fructoselysine-6-kinase
(2003-2011)—was an online magazine about sustainability and social innovation EcoCyc—bioinformatics database for the bacterium Escherichia coli K-12 Registry
List of environmental websites
List_of_environmental_websites
Unit of chromosome length
authors list (link) "Escherichia coli K-12 substr. MG1655 oriC". biocyc.org. EcoCyc. Retrieved 4 April 2021. For historical reasons, the numbering of E. coli's
Centisome
Chain of enzyme-catalyzed reactions steps
loops. "Summary of Escherichia coli K-12 substr. MG1655, version 27.1". ecocyc.org. Retrieved 2023-12-02. Heinrich, Reinhart; Rapoport, Tom A. (February
Linear_biochemical_pathway
EU Clinical Trials Register Database EEGbase Data repository, Database EcoCyc Database DrugBank Database Drug Related Gene Database Database, Data repository
Neuroscience Information Framework
Neuroscience_Information_Framework
Biological database
page, there is an external link linking to public databases like GO, CDD, Ecocyc, DEG, KEGG, DrugBank, Pubchem and Uniprot. u-CARE can be accessed at http://www
U-CARE
Biochemical process related to DNA damage
phenotypes". RNA Biology. 9 (12): 1513–1519. doi:10.4161/rna.22578. PMID 23093802. Page for IstR at Rfam EcoCyc page for Istr-1 EcoliWiki page for TisB
TisB-IstR toxin-antitoxin system
TisB-IstR_toxin-antitoxin_system
ECOCYC
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ECOCYC
Surname or Lastname
English
English : variant spelling of May.
Boy/Male
Arabic
Servant of the Capable
Girl/Female
American, Arabic, Gujarati, Hindu, Indian, Japanese, Kannada, Marathi, Muslim, Sindhi, Tamil, Telugu, Traditional
Eternal
Girl/Female
Indian
Female
Chinese
orchid.
Surname or Lastname
English
English : variant of Stewart.
Boy/Male
Tamil
One who attracts the world
Boy/Male
Hindu
Ever lasting, Lord Vishnu and Lord Krishna
Boy/Male
Muslim
Strong
Boy/Male
Arabic
Keen Eye; Discernment
ECOCYC
ECOCYC
ECOCYC
ECOCYC
ECOCYC